4th Edition of Course on Computational Biosciences (UCIBIO / LAQV / CNCA/ LIP)

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Sala 204 (Faculdade de Ciências e Tecnologia, Edifício Departamental)

Sala 204

Faculdade de Ciências e Tecnologia, Edifício Departamental

Departamento de Química - NOVA SST Campus de Caparica 2829-516 Caparica Portugal
Description

UCIBIO and LAQV members, in collaboration with LIP and CNCA, will instruct a hands-on course tailored for researchers who are interested in starting projects that require high computational power. The course will teach how artificial intelligence works together with classical HPC in order to understand, design, and control biomolecular systems with unprecedented precision.

 

 

The course will cover the following modules:

 

OPTIONAL Module 0:
Introduction to job submission (29 Jan, 10:00 - 12:00)
(required module for users who don't have any knowledge about using a cluster for job submission)

Online hands-on tutorial in which users will learn how to use the CNCA  and BSC AI services. 

Introduction: BSC-AI Services tailored to Bioengineering 

 

Module 1 (OMICS):

High-throughput Sequencing Data (Feb 2, 09:00 – 12:30)

Transcriptome Assembly (Feb 2, 14:00 – 17:30)

Phylogenomics (Feb 3, 09:00 – 12:30)

 

 

Module 2 (Molecular Modelling)

Structure-based Virtual Screening (Feb 3, 14:00 – 17:30)

Molecular Dynamics (Feb 4, 09:00 – 12:30)

Hybrid Quantum Mechanics/Molecular Mechanics (Feb 4, 14:00 – 17:30)

    • OMICS: Phylogenomics
      Convener: Dr Patrícia H Brito (UCIBIO, NOVA Science and Technology, Universidade NOVA de Lisboa)
    • 10:45
      Coffee Break
    • OMICS: Phylogenomics
      Convener: Dr Patrícia H Brito (UCIBIO, NOVA Science and Technology, Universidade NOVA de Lisboa)
    • 12:30
      Lunch
    • Molecular Modeling: Structure-based Virtual Screening
      Convener: Sergio F. Sousa (UCIBIO/REQUIMTE - BioSIM, FMUP)
    • 15:30
      Coffee Break
    • Molecular Modeling: Structure-based Virtual Screening
      Convener: Sergio F. Sousa (UCIBIO/REQUIMTE - BioSIM, FMUP)
    • Molecular Modeling: Molecular Dynamics
      Conveners: Dr Armenio Barbosa (fct.unl.pt), Sergio F. Sousa (UCIBIO/REQUIMTE - BioSIM, FMUP)
    • 10:45
      Coffee Break
    • Molecular Modeling: Molecular Dynamics
      Conveners: Dr Armenio Barbosa (fct.unl.pt), Sergio F. Sousa (UCIBIO/REQUIMTE - BioSIM, FMUP)
    • 12:30
      Lunch
    • Molecular Modeling: Hybrid Quantum Mechanics/Molecular Mechanics
      Conveners: Dr Armenio Barbosa (fct.unl.pt), Sergio F. Sousa (UCIBIO/REQUIMTE - BioSIM, FMUP)
    • 15:30
      Coffee Break
    • Molecular Modeling: Hybrid Quantum Mechanics/Molecular Mechanics
      Conveners: Dr Armenio Barbosa (fct.unl.pt), Sergio F. Sousa (UCIBIO/REQUIMTE - BioSIM, FMUP)